foreach nih (`lt -d * | args 9`)
	echo "LOOP_A"
	set pdir = $PWD
	cd $nih
	set ndir = $PWD
	foreach al (`lt -d * | args 9`)
		echo "LOOP_B"
		cd $al/pred/NN/sparse+hmm
		mkdir NYSYN
		foreach syn (`cat synlist | args 1`)
			echo "LOOP1"
			cp $syn NYSYN/
			set post = $syn:t
			echo '$NETCTL/data/NIH/'$nih/$al"/pred/NN/sparse+hmm/SYN/"$post >> nysynlist
		end
		rm -rf SYN
		mv NYSYN SYN
		rm synlist
		mv nysynlist synlist
		rm -f *.*
		cd ../bl50+hmm
		mkdir NYSYN
                foreach syn (`cat synlist | args 1`)
			echo "LOOP2"
                        cp $syn NYSYN/
                        set post = $syn:t
                        echo '$NETCTL/data/NIH/'$nih/$al"/pred/NN/bl50+hmm/SYN/"$post >> nysynlist
                end
                rm -rf SYN
                mv NYSYN SYN
                rm synlist
                mv nysynlist synlist
		rm -f *.*
		cd $ndir
	end
	cd $pdir
end

		
