../netMHCcons -inptype 1 -f test.pep > test.pep.out
../netMHCcons -f test.fsa > test.fsa.out
../netMHCcons -hlaseq B0702.fsa -inptype 1 -f test.pep > test.pep_userMHC.out

../netMHCcons -method NetMHC -inptype 1 -f test.pep > test.pep.out.NetMHC
../netMHCcons -method NetMHC -f test.fsa > test.fsa.out.NetMHC
../netMHCcons -method NetMHC -hlaseq B0702.fsa -inptype 1 -f test.pep > test.pep_userMHC.out.NetMHC

../netMHCcons -method NetMHCpan -inptype 1 -f test.pep > test.pep.out.NetMHCpan
../netMHCcons -method NetMHCpan -f test.fsa > test.fsa.out.NetMHCpan
../netMHCcons -method NetMHCpan -hlaseq B0702.fsa -inptype 1 -f test.pep > test.pep_userMHC.out.NetMHCpan

../netMHCcons -method PickPocket -inptype 1 -f test.pep > test.pep.out.PickPocket
../netMHCcons -method PickPocket -f test.fsa > test.fsa.out.PickPocket
../netMHCcons -method PickPocket -hlaseq B0702.fsa -inptype 1 -f test.pep > test.pep_userMHC.out.PickPocket
